STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2702PFAM: Alkaline phosphatase; KEGG: pfo:Pfl_0461 phosphodiesterase/alkaline phosphatase D-like. (460 aa)    
Predicted Functional Partners:
Patl_1216
PFAM: Alkaline phosphatase; KEGG: cps:CPS_1963 alkaline phosphatase; Belongs to the alkaline phosphatase family.
  
 
 0.937
folE
PFAM: GTP cyclohydrolase I; KEGG: psp:PSPPH_1071 GTP cyclohydrolase I.
    
 0.916
Patl_1044
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
 0.905
Patl_2910
PFAM: dihydroneopterin aldolase; KEGG: son:SO2921 D-erythro-7,8-dihydroneopterin triphosphate epimerase.
     
 0.905
Patl_3408
KEGG: cps:CPS_4422 alkaline phosphatase D domain protein.
  
  
 
0.905
folE2
GTP cyclohydrolase I; Converts GTP to 7,8-dihydroneopterin triphosphate.
     
  0.900
Patl_0777
TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rba:RB1828 hypothetical protein-signal peptide and transmembrane prediction.
     
  0.900
Patl_2947
Dihydroneopterin triphosphate pyrophosphatase; PFAM: NUDIX hydrolase; KEGG: neu:NE2253 dATP pyrophosphohydrolase.
     
  0.900
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.