STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2756PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0936 TonB-dependent receptor. (741 aa)    
Predicted Functional Partners:
Patl_2754
Conserved hypothetical protein; KEGG: ana:all5013 unknown protein.
 
     0.788
Patl_0967
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa0840 TonB-dependent receptor.
  
    0.773
Patl_1520
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ilo:IL1415 outer membrane protein.
  
    0.736
Patl_3441
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa1271 TonB-dependent receptor.
  
    0.717
Patl_0935
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2973 secreted TonB-dependent receptor.
  
    0.715
Patl_2712
PFAM: protein of unknown function DUF1001; KEGG: cya:CYA_2044 CpeT protein.
  
     0.707
Patl_2755
KEGG: bha:BH2279 hypothetical protein.
 
     0.704
Patl_2750
KEGG: syn:sll1378 periplasmic protein, function unknown.
  
     0.688
Patl_1691
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC3194 TonB-dependent receptor.
  
    0.673
Patl_2180
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAb0299 putative TonB-dependent outer membrane receptor.
  
    0.661
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.