STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2775PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_3036 protein of unknown function DUF214. (409 aa)    
Predicted Functional Partners:
Patl_2776
PFAM: ABC transporter related; SMART: ATPase; KEGG: gme:Gmet_3037 ABC transporter-related protein.
 
 0.997
Patl_2777
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: ade:Adeh_2972 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.984
Patl_2239
PFAM: ABC transporter related; SMART: ATPase; KEGG: xcb:XC_3665 ABC transporter ATP-binding protein.
 
 0.982
Patl_2406
PFAM: ABC transporter related; SMART: ATPase; KEGG: xcb:XC_3665 ABC transporter ATP-binding protein.
 
 0.981
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
 0.964
Patl_0306
PFAM: ABC transporter related; SMART: ATPase; KEGG: cps:CPS_1813 ABC transporter, ATP-binding protein.
 
 0.922
Patl_2913
PFAM: ABC transporter related; SMART: ATPase; KEGG: cps:CPS_2309 ABC transporter, ATP-binding domain.
     0.921
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
     0.886
Patl_2408
PFAM: protein of unknown function DUF214; KEGG: xcb:XC_3667 ABC transporter permease.
  
     0.699
Patl_1866
PFAM: ABC transporter related; SMART: ATPase; KEGG: cps:CPS_1930 putative sulfonate ABC transporter, ATP-binding protein.
 
      0.690
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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