STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2781PFAM: glucose-methanol-choline oxidoreductase GMC oxidoreductase; KEGG: ppr:PBPRA2212 hypothetical alcohol dehydrogenase. (538 aa)    
Predicted Functional Partners:
Patl_1108
PFAM: Ankyrin; KEGG: pfl:PFL_5357 ankyrin domain protein.
    
 0.705
Patl_0109
PFAM: WD-40 repeat; KEGG: pha:PSHAa2902 G-protein beta WD-40 repeat.
    
 0.701
betI
Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes.
 
  
 0.634
Patl_2588
PFAM: aldehyde dehydrogenase; KEGG: pha:PSHAb0419 NAD+-dependent betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.624
Patl_3470
PFAM: sulfotransferase TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: pha:PSHAb0253 putative orphan protein; putative tetratricopeptide repeat domain.
  
 
  0.446
Patl_4246
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.422
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.