STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2802PFAM: protein of unknown function DUF709; KEGG: sfx:S1256 hypothetical protein. (95 aa)    
Predicted Functional Partners:
rnd
Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.
 
     0.907
Patl_2801
TIGRFAM: lytic murein transglycosylase; KEGG: pha:PSHAb0509 putative periplasmic lytic murein transglycosylase.
       0.818
Patl_2800
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ecj:JW1169 predicted isomerase/hydrolase.
  
    0.651
Patl_2804
PFAM: AMP-dependent synthetase and ligase; KEGG: stm:STM1818 acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase).
       0.629
Patl_2798
PFAM: protein of unknown function UPF0153; KEGG: cps:CPS_3515 hypothetical protein; Belongs to the UPF0260 family.
 
     0.618
hflD
PFAM: protein of unknown function DUF489; KEGG: vch:VC1127 hypothetical protein.
  
    0.617
nfuA
HesB/YadR/YfhF; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
     0.588
minC
Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.
  
  
 0.585
Patl_2127
PFAM: protein of unknown function DUF177; KEGG: sdy:SDY_2062 hypothetical protein.
  
     0.518
Patl_3194
PFAM: conserved hypothetical protein 730; KEGG: cps:CPS_3537 lysine decarboxylase family protein.
  
     0.470
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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