STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2829TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I and chorismate binding protein Anthranilate synthase component I-like; KEGG: ppr:PBPRA2486 putative anthranilate/para-aminobenzoate synthase component I, TrpE protein. (544 aa)    
Predicted Functional Partners:
Patl_0653
Aminodeoxychorismate synthase, glutamine amidotransferase subunit; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: mta:Moth_1341 glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase.
 0.999
Patl_2830
Anthranilate synthase, component II; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: yps:YPTB2129 anthranilate synthase component II.
 0.999
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
 
 0.999
trpC
Indole-3-glycerol phosphate synthase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) Indole-3-glycerol phosphate synthase; KEGG: pha:PSHAa1290 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Belongs to the TrpC family.
 
 0.999
trpB
Tryptophan synthase, beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
 
  
 0.991
trpA
Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
 
  
 0.988
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
 
 
 0.968
Patl_1590
TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase Chorismate mutase; KEGG: cps:CPS_1221 chorismate mutase / prephenate dehydratase.
 
 
 0.958
Patl_1588
TIGRFAM: chorismate mutase; PFAM: Chorismate mutase Prephenate dehydrogenase 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: vvy:VV0702 prephenate dehydrogenase.
 
 
 0.956
Patl_2530
PFAM: glycosyl transferase, family 3; KEGG: pfo:Pfl_3579 glycosyl transferase, family 3.
  
 
 0.940
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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