STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2841PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region; KEGG: pha:PSHAa1282 sensory histidine kinase in two-component regulatory system with PhoP. (445 aa)    
Predicted Functional Partners:
Patl_2840
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: pha:PSHAa1283 response regulator in two-component regulatory system with PhoQ.
 0.999
Patl_3747
KEGG: vch:VC2369 sensor histidine kinase FexB; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
  
 
 0.850
Patl_2839
PFAM: Propeptide, PepSY amd peptidase M4.
     
 0.793
Patl_3543
Hpt sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt Two component regulator propeller Two component regulator three Y; KEGG: cps:CPS_0755 GGDEF domain protein.
  
 
 0.734
Patl_2251
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: hch:HCH_04130 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
 
 0.710
Patl_1527
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: yps:YPTB2818 two-component system response regulator.
 
 
 0.701
Patl_0644
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: cps:CPS_2786 response regulator.
 
 
 0.671
Patl_2835
PFAM: YCII-related; KEGG: ppr:PBPRA2508 conserved hypothetical protein.
       0.644
Patl_3604
PAS/PAC sensor hybrid histidine kinase; KEGG: hch:HCH_00794 FOG: PAS/PAC domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
   
 
 0.624
Patl_2818
Periplasmic sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: vch:VC1349 sensory box sensor histidine kinase/response regulator.
 
 
0.623
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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