STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2863TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bcl:ABC4044 TRAP-type transport system permease large protein. (428 aa)    
Predicted Functional Partners:
Patl_2862
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: bcl:ABC4045 TRAP-type transport system permease small protein.
 
 
 0.986
Patl_2864
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: chy:CHY_1301 TRAP dicarboxylate transporter, DctP subunit.
 
  
 0.960
Patl_0771
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: bja:bll6833 probable ABC transporter permease protein.
 
 
 0.921
Patl_0770
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:bll6834 probable ABC transporter substrate-binding protein.
 
  
 0.836
Patl_2861
PFAM: glycoside hydrolase, family 31; KEGG: tfu:Tfu_1613 putative alpha-glucosidase; Belongs to the glycosyl hydrolase 31 family.
       0.693
Patl_0934
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: ppr:PBPRB0505 hypothetical immunogenic protein.
  
     0.610
Patl_2292
TRAP dicarboxylate transporter- DctP subunit; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
   
 0.601
Patl_2293
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: cps:CPS_0130 C4-dicarboxylate transporter family protein, DctQ subunit.
     0.490
Patl_2860
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: reu:Reut_B3533 regulatory protein GntR, HTH:UbiC transcription regulator-associated.
 
     0.420
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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