STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2908PFAM: cobalamin synthesis protein, P47K; KEGG: cps:CPS_1300 cobalamin synthesis protein/P47K family protein. (340 aa)    
Predicted Functional Partners:
rpsN
SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.696
Patl_0294
KEGG: cps:CPS_1901 putative lipoprotein.
 
  
 0.689
folE2
GTP cyclohydrolase I; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.608
dksA
Transcriptional regulator, TraR/DksA family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression.
  
  
 0.607
rpmB
PFAM: ribosomal protein L28; KEGG: msu:MS1942 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.590
Patl_2397
Transcriptional regulator, TraR/DksA family; TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; PFAM: zinc finger, DksA/TraR C4-type; KEGG: ilo:IL0756 DnaK suppressor protein.
  
  
 0.527
Patl_2524
TIGRFAM: elongation factor P-like protein YeiP; PFAM: elongation factor P/YeiP Elongation factor, KOW-like; KEGG: ppr:PBPRA1915 putative elongation factor P family protein.
 
      0.516
rpmG
PFAM: ribosomal protein L33; KEGG: par:Psyc_1711 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
  
 0.482
hisI
PFAM: phosphoribosyl-AMP cyclohydrolase phosphoribosyl-ATP pyrophosphohydrolase; KEGG: yps:YPTB1555 histidine biosynthesis bifunctional protein; In the N-terminal section; belongs to the PRA-CH family.
     
 0.479
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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