STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2933PFAM: alpha/beta hydrolase fold; KEGG: cps:CPS_4105 hypothetical protein. (279 aa)    
Predicted Functional Partners:
Patl_2934
PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC2486 major facilitator family transporter.
 
     0.736
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.679
Patl_2935
KEGG: pha:PSHAb0355 putative acyl-CoA thioesterase, TesB family.
 
     0.536
Patl_3423
Bis(5'nucleosyl)-tetraphosphatase, ApaH; KEGG: hit:NTHI0679 bis-tetraphosphatase, symmetrical; TIGRFAM: bis(5'-nucleosyl)-tetraphosphatase (symmetrical); PFAM: metallophosphoesterase.
    
  0.454
Patl_1738
Hypothetical protein; KEGG: eli:ELI_11880 FMN oxidoreductase.
 
    0.430
Patl_1918
PFAM: acyl-CoA dehydrogenase-like; KEGG: hch:HCH_01686 acyl-CoA dehydrogenase.
  
   0.413
Patl_1370
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ccr:CC0353 enoyl-CoA hydratase/isomerase family protein.
  
 
   0.403
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.