STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3000PFAM: conserved hypothetical protein 1620; KEGG: vfi:VFA0315 hypothetical protein. (358 aa)    
Predicted Functional Partners:
Patl_3001
PFAM: protein of unknown function DUF463, YcjX-like protein; KEGG: yps:YPTB2266 hypothetical protein.
 
  
 0.996
Patl_3002
Phage shock protein C, PspC; PFAM: PspC; KEGG: pha:PSHAa2047 transcriptional activator of the psp operon with PspB, phage shock protein.
     
 0.780
Patl_3003
PFAM: phage shock B; KEGG: cps:CPS_3771 phage shock protein B.
     
 0.776
Patl_3005
Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor, interaction region helix-turn-helix, Fis-type ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: cps:CPS_3774 sigma-54 depedent transcriptional activator PspF.
       0.691
Patl_3006
PFAM: extracellular solute-binding protein, family 5; KEGG: pha:PSHAa2051 ABC transporter periplasmic peptide-binding protein.
       0.691
Patl_3007
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pha:PSHAa2052 peptide transport protein (ABC superfamily, membrane).
       0.691
Patl_3008
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pha:PSHAa2053 peptide transport protein (ABC superfamily, membrane).
       0.691
Patl_3009
KEGG: ppr:PBPRA2444 putative peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; Belongs to the ABC transporter superfamily.
       0.691
Patl_3010
PFAM: ABC transporter related; SMART: ATPase; KEGG: son:SO1801 peptide ABC transporter, ATP-binding protein.
       0.691
Patl_3004
PFAM: PspA/IM30; KEGG: cps:CPS_3772 phage shock protein A.
     
 0.532
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.