STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3003PFAM: phage shock B; KEGG: cps:CPS_3771 phage shock protein B. (78 aa)    
Predicted Functional Partners:
Patl_3002
Phage shock protein C, PspC; PFAM: PspC; KEGG: pha:PSHAa2047 transcriptional activator of the psp operon with PspB, phage shock protein.
 
 
 0.999
Patl_3004
PFAM: PspA/IM30; KEGG: cps:CPS_3772 phage shock protein A.
 
 
 0.997
Patl_4044
PFAM: PspA/IM30; KEGG: son:SO1807 phage shock protein A.
 
 
 0.991
Patl_3747
KEGG: vch:VC2369 sensor histidine kinase FexB; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
    
 
 0.878
Patl_3006
PFAM: extracellular solute-binding protein, family 5; KEGG: pha:PSHAa2051 ABC transporter periplasmic peptide-binding protein.
 
     0.831
Patl_3005
Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor, interaction region helix-turn-helix, Fis-type ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: cps:CPS_3774 sigma-54 depedent transcriptional activator PspF.
 
   
 0.817
Patl_0507
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt Diverse 7TM receptor, transmembrane region; KEGG: son:SO3457 sensor histidine kinase/response regulator.
    
 
 0.789
Patl_3543
Hpt sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt Two component regulator propeller Two component regulator three Y; KEGG: cps:CPS_0755 GGDEF domain protein.
    
 
 0.789
Patl_4293
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt Diverse 7TM receptor, transmembrane region; KEGG: cps:CPS_4481 sensor histidine kinase/response regulator.
    
 
 0.789
Patl_1224
PFAM: PspA/IM30; KEGG: hch:HCH_06597 phage shock protein A (IM30), suppresses sigma54-dependent transcription.
 
 
 0.784
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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