STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3067Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: pfl:PFL_3447 hypothetical protein. (369 aa)    
Predicted Functional Partners:
Patl_3066
PFAM: glycosyl transferase, family 2; KEGG: pho:PH0430 hypothetical protein.
 
     0.829
Patl_3068
PFAM: Capsule polysaccharide biosynthesis; KEGG: tcx:Tcr_1514 capsule polysaccharide biosynthesis.
 
     0.820
Patl_3070
PFAM: glycosyl transferase, family 2; KEGG: ftu:FTT1452c glycosyltransferase.
 
     0.816
Patl_3069
PFAM: UDP-galactopyranose mutase; KEGG: gka:GK3316 UDP-galactopyranose mutase.
       0.773
Patl_1338
PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: neu:NE1444 TPR repeat.
 
     0.639
Patl_3076
PFAM: N-acetylneuraminic acid synthase-like; KEGG: pfl:PFL_1625 NeuB family protein.
     
 0.638
Patl_3075
Spore coat polysaccharide biosynthesis protein predicted glycosyltransferase-like protein; KEGG: cac:CAC2186 glycosyltransferase.
       0.618
Patl_3796
Tetratricopeptide TPR_2; PFAM: TPR repeat Sel1-like repeat Tetratricopeptide TPR_3 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: noc:Noc_0166 TPR repeat protein.
 
     0.613
Patl_3073
KEGG: bja:bsr6286 hypothetical protein.
  
  
 0.592
Patl_1792
KEGG: yps:YPTB1011 mannose-1-phosphate guanylyltransferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II Nucleotidyl transferase Cupin 2, conserved barrel.
     
 0.584
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.