STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3142KEGG: mca:MCA1563 hypothetical protein. (626 aa)    
Predicted Functional Partners:
Patl_3143
PFAM: ABC-2 type transporter; KEGG: pae:PA3671 putative ABC-2 type transport system permease protein.
  
 0.994
Patl_3141
KEGG: mca:MCA1564 hypothetical protein.
 
     0.950
Patl_3144
PFAM: ABC transporter related; SMART: ATPase; KEGG: pae:PA3672 putative ABC-2 type transport system ATP-binding protein.
 
   
 0.950
Patl_3145
Hypothetical protein; KEGG: ilo:IL1877 uncharacterized conserved membrane protein, smp family.
       0.528
Patl_4212
KEGG: cps:CPS_1665 hypothetical protein.
  
     0.406
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.