STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3159PFAM: protein of unknown function DUF339; KEGG: ilo:IL0819 hypothetical protein. (83 aa)    
Predicted Functional Partners:
Patl_1797
KEGG: pha:PSHAa1649 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
 
 
 0.920
Patl_0379
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like FAD dependent oxidoreductase FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afu:AF1463 fumarate reductase flavoprotein subunit.
  
 
 0.901
Patl_3160
PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: ppr:PBPRA3100 hypothetical protein.
 
     0.817
Patl_3161
PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pha:PSHAa0721 FKBP-type peptidyl prolyl cis-trans isomerase (rotamase).
       0.735
Patl_3158
Hypothetical protein.
       0.709
Patl_3157
PFAM: MaoC-like dehydratase; KEGG: son:SO0559 MaoC domain protein.
       0.660
Patl_1795
PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: pha:PSHAa1651 putative succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhD.
 
   
 0.615
Patl_1796
Succinate dehydrogenase subunit D; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
 
     0.614
zipA
Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.
  
     0.575
Patl_1798
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: yps:YPTB1146 succinate dehydrogenase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
  
 0.522
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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