STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3185KEGG: cps:CPS_3650 hypothetical protein. (118 aa)    
Predicted Functional Partners:
Patl_3184
PFAM: pseudouridine synthase; KEGG: vfi:VF0613 tRNA pseudouridine synthase C.
  
  
 0.945
Patl_3183
PFAM: flavodoxin/nitric oxide synthase; KEGG: ppr:PBPRA2972 hypothetical protein.
       0.853
Patl_3186
KEGG: pha:PSHAa1972 hypothetical protein.
       0.805
Patl_3187
KEGG: ilo:IL0852 hypothetical protein.
       0.805
Patl_0064
PFAM: Rhomboid-like protein; KEGG: cps:CPS_0123 putative GlpG protein.
  
     0.592
Patl_3779
PFAM: beta-ketoacyl synthase; KEGG: pae:PA5174 probable beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
     0.525
Patl_1610
PFAM: protein of unknown function DUF1282; KEGG: son:SO1787 hypothetical protein.
  
     0.512
nfuA
HesB/YadR/YfhF; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
     0.451
Patl_2193
PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: ilo:IL1456 D-alanyl-D-alanine carboxypeptidase.
  
     0.424
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.