STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3198KEGG: pha:PSHAa0835 competence protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1. (102 aa)    
Predicted Functional Partners:
Patl_3342
Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
   
  
 0.738
Patl_1779
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase-like ComEC/Rec2-related protein; KEGG: cps:CPS_2124 DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.674
queF
GTP cyclohydrolase I; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
     
 0.580
Patl_0174
PFAM: type II secretion system protein; KEGG: ilo:IL0371 type II secretory pathway.
  
  
 0.551
Patl_0233
TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: ppr:PBPRA3479 putative general secretion pathway protein F.
  
  
 0.551
Patl_3231
PFAM: type II secretion system protein; KEGG: pae:PA2676 probable type II secretion system protein.
  
  
 0.551
Patl_3343
PFAM: type II secretion system protein; KEGG: cps:CPS_4448 type IV pilus biogenesis protein PilC.
  
  
 0.551
Patl_0148
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
  
 0.547
Patl_3836
PFAM: response regulator receiver; KEGG: ilo:IL0510 chemotaxis response regulator.
  
    0.505
Patl_0173
PFAM: type II secretion system protein E General secretory system II, protein E-like; KEGG: pha:PSHAa2692 mannose-sensitive agglutinin (MSHA) biogenesis protein MshE (pilus type IV).
  
  
 0.477
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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