STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3203PFAM: protein of unknown function DUF1017; KEGG: son:SO3158 polysaccharide synthesis-related protein. (247 aa)    
Predicted Functional Partners:
Patl_3202
Hypothetical protein; KEGG: sdy:SDY_0962 putative regulator.
 
  
 0.946
Patl_3204
PFAM: protein of unknown function DUF940, membrane lipoprotein putative; KEGG: sfx:S3555 hypothetical protein.
 
     0.946
Patl_0728
KEGG: son:SO3886 hypothetical protein.
  
     0.673
Patl_0402
Lysine decarboxylase transcriptional regulator, CadC; PFAM: transcriptional regulatory protein-like; KEGG: son:SO1699 transcriptional regulator.
 
     0.638
Patl_0729
PFAM: AAA ATPase, central region; SMART: ATPase; KEGG: son:SO3885 ATPase, AAA family.
  
 
   0.582
Patl_0111
TIGRFAM: conserved hypothetical protein; KEGG: cps:CPS_0434 conserved hypothetical protein.
  
     0.565
Patl_2305
PFAM: cytochrome P450; KEGG: mlo:mlr5876 cytochrome P450.
   
 0.541
Patl_3385
KEGG: sdy:SDY_2524 hypothetical protein.
  
     0.525
Patl_3201
KEGG: ilo:IL0566 hypothetical protein.
       0.508
Patl_3382
PFAM: major facilitator superfamily MFS_1; KEGG: bsu:BG13075 glucose/mannose:H+ symporter.
  
     0.495
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.