STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3205KEGG: noc:Noc_2177 rhamnosyltransferase. (288 aa)    
Predicted Functional Partners:
Patl_3206
KEGG: vfi:VF0175 glycosyltransferase.
 
   
 0.929
Patl_3240
PFAM: ABC-2 type transporter; KEGG: ecc:c3698 kpsM protein.
 
  
 0.780
Patl_1070
PFAM: sugar transferase; KEGG: vvu:VV21582 sugar transferase involved in lipopolysaccharide synthesis.
  
  
 0.701
Patl_3257
KEGG: sha:SH0326 hypothetical protein.
  
    0.689
Patl_3207
PFAM: glycosyl transferase, family 2; KEGG: pst:PSPTO1074 glycosyl transferase, group 2 family protein.
 
     0.665
Patl_2363
KEGG: cps:CPS_2256 hypothetical protein.
  
    0.636
Patl_3241
PFAM: polysaccharide export protein; KEGG: dvu:DVU3140 capsular polysaccharide transport protein, putative.
 
  
 0.636
Patl_0792
KEGG: pha:PSHAa1003 hypothetical protein.
  
     0.622
Patl_3238
PFAM: lipopolysaccharide biosynthesis; KEGG: ecc:c3687 kpsE; putative capsule polysaccharide export transport system permease protein.
 
     0.621
Patl_2952
KEGG: pha:PSHAa2825 hypothetical protein.
  
     0.616
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.