STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3209KEGG: mca:MCA0624 hypothetical protein. (389 aa)    
Predicted Functional Partners:
Patl_3210
KEGG: syd:Syncc9605_2166 hypothetical protein.
 
     0.784
Patl_3216
PFAM: glycosyl transferase, group 1; KEGG: sme:SMb21308 putative glycosyltransferase, forming alpha glycosyl linkages protein.
 
  
 0.771
Patl_3217
PFAM: glycosyl transferase, family 2; KEGG: sme:SMb21313 putative bifunctional glycosyltransferase, forming alpha-glycosyl and beta-glycosyl linkages protein.
 
     0.761
Patl_3208
Hypothetical protein.
 
     0.684
Patl_3211
Glycerol-3-phosphate cytidylyltransferase; TIGRFAM: cytidyltransferase-related domain; PFAM: Riboflavin kinase / FAD synthetase cytidylyltransferase; KEGG: cps:CPS_4205 glycerol-3-phosphate cytidyltransferase.
       0.565
Patl_3212
PFAM: coagulation factor 5/8 type-like; KEGG: jan:Jann_0820 hypothetical protein.
       0.523
Patl_3207
PFAM: glycosyl transferase, family 2; KEGG: pst:PSPTO1074 glycosyl transferase, group 2 family protein.
 
     0.478
Patl_3213
KEGG: jan:Jann_0820 hypothetical protein.
       0.474
Patl_1070
PFAM: sugar transferase; KEGG: vvu:VV21582 sugar transferase involved in lipopolysaccharide synthesis.
  
  
 0.464
Patl_3218
PFAM: glycosyl transferase, family 2 glycosyl transferase, group 1; KEGG: xcc:XCC2933 glycosyl transferase.
 
  
 0.451
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.