STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3232PFAM: type II secretion system protein E; SMART: ATPase; KEGG: pae:PA2677 probable type II secretion protein. (545 aa)    
Predicted Functional Partners:
Patl_3231
PFAM: type II secretion system protein; KEGG: pae:PA2676 probable type II secretion system protein.
 
 
 0.991
Patl_3230
TIGRFAM: general secretion pathway protein G; PFAM: methylation type II secretion system protein G; KEGG: pae:PA2675 probable type II secretion system protein.
 
 
 0.935
Patl_0174
PFAM: type II secretion system protein; KEGG: ilo:IL0371 type II secretory pathway.
 
 
 0.916
Patl_0233
TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: ppr:PBPRA3479 putative general secretion pathway protein F.
 
 
 0.916
Patl_3343
PFAM: type II secretion system protein; KEGG: cps:CPS_4448 type IV pilus biogenesis protein PilC.
 
 
 0.916
Patl_0232
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
  
 
0.912
Patl_3236
PFAM: type II and III secretion system protein NolW-like; KEGG: pae:PA1382 probable type II secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.888
Patl_3342
Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.849
Patl_0239
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.842
Patl_0234
TIGRFAM: general secretion pathway protein G; PFAM: methylation type II secretion system protein G; KEGG: eca:ECA3106 general secretion pathway protein G.
 
 
 0.704
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.