STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3238PFAM: lipopolysaccharide biosynthesis; KEGG: ecc:c3687 kpsE; putative capsule polysaccharide export transport system permease protein. (483 aa)    
Predicted Functional Partners:
Patl_3239
PFAM: ABC transporter related; SMART: ATPase; KEGG: cjr:CJE1620 capsular polysaccharide ABC transporter, ATP-binding protein.
 
 
 0.998
Patl_3240
PFAM: ABC-2 type transporter; KEGG: ecc:c3698 kpsM protein.
 
 
 0.998
Patl_3241
PFAM: polysaccharide export protein; KEGG: dvu:DVU3140 capsular polysaccharide transport protein, putative.
 
  
 0.954
Patl_1072
PFAM: polysaccharide export protein; KEGG: hch:HCH_04680 periplasmic protein involved in polysaccharide export.
  
  
 0.674
Patl_1170
PFAM: polysaccharide export protein; KEGG: cps:CPS_5025 polysaccharide biosynthesis/export protein.
  
  
 0.674
Patl_4001
PFAM: polysaccharide export protein; KEGG: hch:HCH_04680 periplasmic protein involved in polysaccharide export.
  
  
 0.674
Patl_1212
KEGG: tbd:Tbd_2498 hypothetical protein.
  
  
 0.622
Patl_3205
KEGG: noc:Noc_2177 rhamnosyltransferase.
 
     0.621
Patl_3362
AAA ATPase containing von Willebrand factor type A (vWA) domain-like protein; KEGG: pha:PSHAa2076 hypothetical protein; membrane protein.
  
    0.547
Patl_4149
KEGG: pha:PSHAb0553 putative lipoprotein.
   
    0.524
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.