STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3264PFAM: response regulator receiver; KEGG: pha:PSHAa0913 chemotaxis protein. (120 aa)    
Predicted Functional Partners:
Patl_3027
CheA signal transduction histidine kinase; PFAM: CheW-like protein ATP-binding region, ATPase-like Signal transducing histidine kinase, homodimeric Hpt; KEGG: son:SO3207 chemotaxis protein.
 
 0.951
Patl_3629
PFAM: response regulator receiver; KEGG: ppu:PP5324 response regulator.
  
  0.951
Patl_3039
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
  
 
 0.942
Patl_1591
PFAM: response regulator receiver; KEGG: son:SO0549 chemotaxis protein CheY/response regulator receiver domain protein.
 
 
  0.931
Patl_3547
PFAM: response regulator receiver; KEGG: lic:LIC12088 response regulator.
  
  0.919
Patl_3029
PFAM: response regulator receiver; KEGG: son:SO3209 chemotaxis protein CheY.
  
 
0.917
Patl_0248
PFAM: CheC-like protein; KEGG: ilo:IL1932 chemotaxis protein CheX.
    
  0.901
Patl_3028
Chemotaxis phosphatase, CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
   
 
 0.900
Patl_0068
PFAM: histidine kinase, HAMP region chemotaxis sensory transducer; KEGG: hch:HCH_01925 methyl-accepting chemotaxis protein.
  
 
  0.751
Patl_0520
PFAM: histidine kinase, HAMP region chemotaxis sensory transducer Cache, type 2; KEGG: vpa:VPA0024 methyl-accepting chemotaxis protein.
  
  0.751
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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