STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3277PFAM: tryptophan halogenase; KEGG: cps:CPS_3700 putative tryptophan halogenase. (510 aa)    
Predicted Functional Partners:
Patl_3278
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3698 TonB-dependent receptor.
 
     0.877
Patl_4288
SMART: Transcription factor jumonji/aspartyl beta-hydroxylase; KEGG: xcb:XC_4055 Pass1-related protein.
 
     0.779
Patl_4286
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3737 TonB-dependent receptor.
 
     0.773
Patl_4287
SapC; PFAM: SapC; KEGG: cps:CPS_3736 hypothetical protein.
 
     0.772
Patl_2547
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3737 TonB-dependent receptor.
 
     0.769
Patl_2694
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3737 TonB-dependent receptor.
 
     0.769
Patl_3686
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0238 TonB-dependent receptor.
 
     0.767
Patl_1963
SapC; PFAM: SapC; KEGG: cps:CPS_0240 hypothetical protein.
 
     0.764
Patl_2545
SapC; PFAM: SapC; KEGG: cps:CPS_0240 hypothetical protein.
 
     0.764
Patl_3818
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0993 TonB-dependent receptor.
 
     0.753
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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