STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3293PFAM: LrgB-like protein; KEGG: gme:Gmet_1204 LrgB-like protein. (237 aa)    
Predicted Functional Partners:
Patl_3294
LrgA; PFAM: LrgA; KEGG: dar:Daro_3105 LrgA.
 
  
 0.982
Patl_2752
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: tte:TTE0544 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.577
Patl_3291
PFAM: protein of unknown function DUF1566; KEGG: pha:PSHAa2268 Fimh-like protein.
       0.547
Patl_3292
PFAM: protein of unknown function DUF1566; KEGG: pha:PSHAa2269 hypothetical protein.
       0.547
Patl_3295
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver sigma-54 factor, interaction region helix-turn-helix, Fis-type; SMART: ATPase; KEGG: cps:CPS_5030 sigma-54 dependent DNA-binding response regulator, Fis family.
       0.491
Patl_3077
Hypothetical protein.
   
    0.456
Patl_3296
PFAM: ATP-binding region, ATPase-like; KEGG: cps:CPS_5031 sensor histidine kinase.
       0.448
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.