STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3296PFAM: ATP-binding region, ATPase-like; KEGG: cps:CPS_5031 sensor histidine kinase. (672 aa)    
Predicted Functional Partners:
Patl_3295
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver sigma-54 factor, interaction region helix-turn-helix, Fis-type; SMART: ATPase; KEGG: cps:CPS_5030 sigma-54 dependent DNA-binding response regulator, Fis family.
 
 
   0.906
Patl_3747
KEGG: vch:VC2369 sensor histidine kinase FexB; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
 
 
 0.850
Patl_0419
PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: cps:CPS_0309 TPR domain protein.
 
 
 
 0.790
Patl_1169
PFAM: lipopolysaccharide biosynthesis; KEGG: cps:CPS_5026 chain length determinant family protein.
 
     0.788
Patl_1173
TIGRFAM: eight transmembrane protein EpsH; KEGG: neu:NE1797 hypothetical protein.
 
     0.788
Patl_1172
PFAM: polysaccharide deacetylase; KEGG: eba:ebA4258 polysaccharide deacetylase.
 
     0.777
Patl_1212
KEGG: tbd:Tbd_2498 hypothetical protein.
 
     0.775
Patl_1170
PFAM: polysaccharide export protein; KEGG: cps:CPS_5025 polysaccharide biosynthesis/export protein.
 
     0.774
Patl_1211
Hpr(Ser) kinase/phosphatase; KEGG: tbd:Tbd_2497 HPr kinase.
 
     0.768
Patl_1201
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: cps:CPS_0310 TPR domain protein.
 
     0.760
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.