STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3358PFAM: protein of unknown function DUF481; KEGG: pha:PSHAa0397 hypothetical protein. (245 aa)    
Predicted Functional Partners:
Patl_3357
KEGG: ilo:IL2210 putative salt-induced outer membrane protein.
 
    
0.649
Patl_1643
KEGG: cps:CPS_2564 hypothetical protein.
  
     0.523
Patl_1345
KEGG: pha:PSHAa2432 hypothetical protein.
  
     0.507
Patl_4040
KEGG: pha:PSHAa0505 hypothetical protein.
  
     0.506
Patl_2985
PFAM: TPR repeat; SMART: Tetratricopeptide region; KEGG: cps:CPS_3751 TPR domain protein.
  
     0.458
Patl_3691
KEGG: dar:Daro_4065 hypothetical protein.
  
     0.442
Patl_3356
Putative signal transduction protein; KEGG: cps:CPS_4407 hypothetical protein.
       0.425
Patl_2061
PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; KEGG: son:SO2352 bax protein, putative.
  
     0.415
Patl_3539
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
     0.407
Patl_4278
KEGG: pha:PSHAa0344 hypothetical protein.
  
     0.400
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.