STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3370PFAM: response regulator receiver helix-turn-helix, Fis-type; KEGG: ilo:IL0166 response regulator with a fis-type DNA-binding domain (CheY, fis domains). (175 aa)    
Predicted Functional Partners:
Patl_3369
Signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; KEGG: ilo:IL0167 signal transduction histidine kinase.
 
  
 0.995
Patl_3368
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: son:SO4077 TonB-dependent receptor, putative.
  
    0.655
Patl_1295
KEGG: rba:RB641 sensory histidine protein kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
 
 
 0.598
Patl_1750
KEGG: nmu:Nmul_A2207 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4 PAS fold; SMART: PAS.
 
 
 0.581
Patl_3792
KEGG: ppr:PBPRA1285 hypothetical protein.
       0.578
Patl_2664
GAF sensor hybrid histidine kinase; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3; SMART: PAC motif; KEGG: dar:Daro_1614 PAS.
 
 
 
 0.520
Patl_4293
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt Diverse 7TM receptor, transmembrane region; KEGG: cps:CPS_4481 sensor histidine kinase/response regulator.
 
 
 
 0.480
Patl_3543
Hpt sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt Two component regulator propeller Two component regulator three Y; KEGG: cps:CPS_0755 GGDEF domain protein.
 
 
 
 0.469
Patl_3367
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: pfo:Pfl_0199 transcriptional regulator, Crp/Fnr family.
     
 0.466
Patl_2591
Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
   
    0.456
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.