STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3410PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_4420 TonB-dependent receptor. (781 aa)    
Predicted Functional Partners:
Patl_2846
PFAM: protein of unknown function DUF81; KEGG: cps:CPS_1011 hypothetical protein.
  
     0.680
Patl_4165
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xcv:XCV2894 TonB-dependent outer membrane receptor.
  
     0.671
Patl_0282
KEGG: xac:XAC1528 toxin secretion ABC transporter ATP-binding protein.
  
     0.656
Patl_3278
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3698 TonB-dependent receptor.
 
   
 0.646
Patl_3409
KEGG: cps:CPS_4421 hypothetical protein.
 
     0.638
Patl_3635
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2119 TonB-dependent receptor.
  
     0.617
Patl_4271
KEGG: pha:PSHAb0058 putative orphan protein.
  
    0.612
Patl_0313
PFAM: PepSY-associated TM helix; KEGG: pfo:Pfl_0927 aspartate kinase.
  
     0.603
Patl_3818
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0993 TonB-dependent receptor.
 
   
 0.601
Patl_0284
KEGG: xcv:XCV1569 outer membrane efflux protein.
  
     0.599
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.