STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3484PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_3514 membrane protein. (288 aa)    
Predicted Functional Partners:
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
  
    0.785
Patl_3485
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cps:CPS_0915 glycerophosphoryl diester phosphodiesterase family protein.
   
   0.768
Patl_4212
KEGG: cps:CPS_1665 hypothetical protein.
  
     0.483
rsgA
Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
       0.473
Patl_3280
Hypothetical protein; KEGG: ppr:PBPRA0441 putative general secretion pathway protein B.
  
     0.444
Patl_0007
KEGG: hch:HCH_00343 hypothetical protein.
  
     0.434
Patl_1224
PFAM: PspA/IM30; KEGG: hch:HCH_06597 phage shock protein A (IM30), suppresses sigma54-dependent transcription.
  
     0.429
Patl_0792
KEGG: pha:PSHAa1003 hypothetical protein.
  
     0.425
Patl_2169
PFAM: type IV pilus assembly PilZ; KEGG: cps:CPS_2244 hypothetical protein.
  
     0.418
Patl_3174
Hypothetical protein.
  
     0.402
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.