STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3502Aminopeptidase P, Metallo peptidase, MEROPS family M24B; PFAM: peptidase M24 peptidase M24B, X-Pro dipeptidase/aminopeptidase-like; KEGG: pha:PSHAa0562 proline aminopeptidase P II; Belongs to the peptidase M24B family. (443 aa)    
Predicted Functional Partners:
Patl_3503
TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: pha:PSHAa0561 hypothetical protein; Belongs to the UPF0149 family.
 
   
 0.908
Patl_3501
2-polyprenylphenol 6-hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: vvu:VV11553 hypothetical protein.
  
  
 0.859
Patl_3500
TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: cps:CPS_3090 YbaK/EbsC protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.566
trpC
Indole-3-glycerol phosphate synthase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) Indole-3-glycerol phosphate synthase; KEGG: pha:PSHAa1290 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Belongs to the TrpC family.
  
  
 0.466
Patl_3499
KEGG: vfi:VF1386 acetyltransferase, GNAT family.
       0.424
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
 
 
 0.411
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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