STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3530PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: ccr:CC0785 2-dehydro-3-deoxygalactonokinase. (318 aa)    
Predicted Functional Partners:
Patl_0899
PFAM: KDPG and KHG aldolase; KEGG: pfo:Pfl_4124 KDPG and KHG aldolase.
 
  
 0.967
Patl_2646
Galactonate dehydratase; PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: ret:RHE_PE00096 putative galactonate dehydratase protein.
 
 
 0.950
Patl_1686
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: cps:CPS_1173 mandelate racemase/muconate lactonizing enzyme family protein.
 
 
 0.928
Patl_0898
PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: xcv:XCV1794 putative 2-oxo-3-deoxygalactonate kinase.
  
  
 
0.925
Patl_3531
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: pfo:Pfl_3453 senescence marker protein-30 (SMP-30).
 
     0.870
Patl_3529
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll7191 putative oxidoreductase.
 
     0.853
Patl_3532
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: ccr:CC0783 transcriptional regulator, GntR family.
 
   
 0.694
Patl_3534
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
       0.508
Patl_0897
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sil:SPO2414 mandelate racemase/muconate lactonizing enzyme family protein.
 
  
 0.505
Patl_2550
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sco:SCO3480 putative racemase.
 
  
 0.501
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.