STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3545TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL response regulator receiver; KEGG: cps:CPS_3950 response regulator/GGDEF domain protein. (569 aa)    
Predicted Functional Partners:
Patl_1295
KEGG: rba:RB641 sensory histidine protein kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
  
 
 0.967
Patl_3747
KEGG: vch:VC2369 sensor histidine kinase FexB; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
 
 
 0.962
Patl_1750
KEGG: nmu:Nmul_A2207 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4 PAS fold; SMART: PAS.
 
 
 0.952
Patl_3914
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: noc:Noc_0226 PAS sensor diguanylate cyclase and phophodiesterase.
 
 
0.948
Patl_2247
TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer PAS fold-3 PAS fold; KEGG: pha:PSHAa0395 aerotaxis sensory transducer.
 
 0.943
Patl_3477
KEGG: hch:HCH_03096 FOG: PAS/PAC domain; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer PAS fold-3 PAS fold-4 PAS fold; SMART: PAC motif.
  
 
 0.936
Patl_3604
PAS/PAC sensor hybrid histidine kinase; KEGG: hch:HCH_00794 FOG: PAS/PAC domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
 
 
 0.931
Patl_2664
GAF sensor hybrid histidine kinase; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3; SMART: PAC motif; KEGG: dar:Daro_1614 PAS.
 
 
 0.911
Patl_3960
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: hch:HCH_05755 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
 
 
0.904
Patl_1985
Multi-sensor hybrid histidine kinase; PFAM: Na+/solute symporter response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; SMART: PAS; KEGG: ilo:IL2152 multidomain protein, contains Na+/proline symporter PutP-like domain, sensory histidine kinase and receiver domain.
  
 
 0.900
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.