STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3550PFAM: protein of unknown function DUF748; KEGG: son:SO2796 hypothetical protein. (1074 aa)    
Predicted Functional Partners:
Patl_3551
KEGG: son:SO4561 hypothetical protein.
 
     0.764
Patl_3880
Transcriptional regulator, DeoR family; PFAM: regulatory protein, DeoR Helix-turn-helix, type 11; KEGG: son:SO4742 transcriptional regulator, DeoR family.
  
  
 0.509
Patl_1258
PFAM: outer membrane chaperone Skp (OmpH); KEGG: cps:CPS_1562 outer membrane protein, OmpH family; Belongs to the skp family.
 
 
 0.490
Patl_3097
PFAM: flagellar basal body rod protein protein of unknown function DUF1078-like flagellar basal body FlaE; KEGG: son:SO3247 flagellar hook protein FlgE.
   
 
 0.458
Patl_0466
PFAM: amidohydrolase WD40-like beta Propeller; KEGG: pha:PSHAa1171 hypothetical protein.
  
 
 0.402
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.