STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3555KEGG: gox:GOX0247 hypothetical protein. (168 aa)    
Predicted Functional Partners:
Patl_3556
KEGG: cch:Cag_1238 hypothetical protein.
       0.762
Patl_3554
Hypothetical protein.
       0.723
Patl_4199
PFAM: SH3, type 3; SMART: SH3-like region; KEGG: btk:BT9727_1787 NLP/P60 family protein.
  
     0.468
Patl_1954
PFAM: protein of unknown function DUF469; KEGG: vpa:VPA0178 hypothetical protein.
  
     0.463
Patl_1965
Hypothetical protein; KEGG: vpa:VPA0953 putative biofilm-associated surface protein.
  
     0.433
Patl_1303
PFAM: Sporulation related; KEGG: eli:ELI_10110 hypothetical protein.
 
     0.424
Patl_1764
KEGG: rso:RSc0798 putative purine nucleoside permease protein.
  
     0.421
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.