STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srkAAminoglycoside phosphotransferase; A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response. (321 aa)    
Predicted Functional Partners:
Patl_3573
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: ilo:IL2573 iron-sulfur cluster-binding protein.
       0.900
Patl_3575
PFAM: DSBA oxidoreductase; KEGG: cps:CPS_4348 thiol:disulfide interchange protein DsbA.
  
  
 0.784
Patl_3572
PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: cps:CPS_3170 sensor histidine kinase.
       0.468
Patl_3571
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: cps:CPS_3172 DNA-binding response regulator.
  
    0.466
Patl_3789
KEGG: cps:CPS_0942 putative lipoprotein.
  
     0.463
yacG
Protein of unknown function DUF329; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase.
  
     0.462
Patl_3570
Hypothetical protein.
       0.462
Patl_2591
Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
   
    0.437
Patl_1993
C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A; KEGG: cps:CPS_2810 carboxyl-terminal protease Prc; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF peptidase S41; Belongs to the peptidase S41A family.
  
   
 0.418
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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