STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylBTIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: yps:YPTB3892 xylulose kinase. (492 aa)    
Predicted Functional Partners:
xylA
D-xylose isomerase; KEGG: ppr:PBPRA0457 putative D-xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase-like TIM barrel; Belongs to the xylose isomerase family.
 
 
 0.992
Patl_0659
PFAM: ribulose-phosphate 3-epimerase; KEGG: son:SO0292 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.941
Patl_0822
KEGG: xoo:XOO0340 hypothetical protein.
  
  
 0.900
Patl_3724
Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type; KEGG: eca:ECA0101 xylose operon regulatory protein.
 
 
 
 0.845
Patl_3330
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
 
 0.690
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
  
 
 0.541
Patl_4121
Transcriptional regulator, DeoR family; PFAM: putative sugar-binding region; KEGG: pha:PSHAa1504 transcriptional regulator.
 
  
 0.517
Patl_4117
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01497 probable sorbitol/mannitol transport inner membrane transmembrane protein.
 
   
 0.515
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.514
Patl_0337
Transcriptional regulator; PFAM: ROK domain containing protein; KEGG: xcb:XC_4142 transcriptional regulator.
 
  
 0.509
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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