STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3770PFAM: beta-lactamase; KEGG: bat:BAS2564 hypothetical protein. (428 aa)    
Predicted Functional Partners:
Patl_2902
PFAM: beta-lactamase; KEGG: nar:Saro_2025 beta-lactamase.
  
     0.754
Patl_3925
PFAM: putative esterase; KEGG: ilo:IL2088 predicted hydrolase of the alpha/beta superfamily.
     0.577
Patl_3769
Lysine decarboxylase transcriptional regulator, CadC; PFAM: transcriptional regulatory protein-like; KEGG: ilo:IL1819 N-terminal winged-HTH domain fused to TolB-like domain.
       0.429
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.