STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3835TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: pha:PSHAa1211 sensory box/GGDEF protein. (316 aa)    
Predicted Functional Partners:
Patl_2248
PFAM: response regulator receiver metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; KEGG: pha:PSHAa1150 response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase).
 
    0.936
Patl_3836
PFAM: response regulator receiver; KEGG: ilo:IL0510 chemotaxis response regulator.
 
     0.929
Patl_4285
KEGG: pha:PSHAa2265 metal-dependent phosphohydrolase domain; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region.
 
   0.835
Patl_0256
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: hch:HCH_01424 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
 
   0.780
Patl_1538
PFAM: EAL response regulator receiver; KEGG: vvy:VVA0651 GGDEF family protein.
  
 0.772
Patl_4035
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL response regulator receiver; KEGG: cps:CPS_0394 response regulator/GGDEF/EAL domain protein.
 
   0.757
Patl_2246
Diguanylate cyclase/phosphodiesterase; PFAM: conserved hypothetical protein EAL; KEGG: ilo:IL1784 disrupted signaling protein (xGGDEF and EAL domains).
 
    0.752
Patl_2196
Diguanylate cyclase/phosphodiesterase; PFAM: conserved hypothetical protein EAL; KEGG: pca:Pcar_2565 sensory box/GGDEF family protein.
 
    0.750
Patl_3930
Diguanylate phosphodiesterase; PFAM: EAL; KEGG: pha:PSHAa2294 hypothetical protein.
  
    0.733
Patl_3834
PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_0706 putative AmpG protein.
       0.628
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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