STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3902RNAse Z; PFAM: beta-lactamase-like; KEGG: ctc:CTC00902 putative hydrolase. (312 aa)    
Predicted Functional Partners:
Patl_3901
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: aci:ACIAD1534 putative TonB-dependent receptor protein (outer membrane salicin receptor).
       0.732
Patl_0573
Endonuclease; PFAM: DNA/RNA non-specific endonuclease; KEGG: stm:STM1330 putative DNA/RNA non-specific endonuclease.
   
   0.711
Patl_0924
PFAM: DNA/RNA non-specific endonuclease; KEGG: fnu:FN1280 endonuclease.
   
   0.711
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.