STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_4015PFAM: RNA-binding region RNP-1 (RNA recognition motif); KEGG: pha:PSHAa0253 hypothetical protein. (151 aa)    
Predicted Functional Partners:
gpmI
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
   
 0.957
Patl_1747
PFAM: beta-lactamase-like RNA-metabolising metallo-beta-lactamase; KEGG: pae:PA3614 metallo-beta-lactamase family protein.
   
 0.911
Patl_0109
PFAM: WD-40 repeat; KEGG: pha:PSHAa2902 G-protein beta WD-40 repeat.
  
 
 0.812
Patl_0817
KEGG: rba:RB12097 hypothetical protein-signal peptide prediction.
    
 
 0.812
Patl_1930
PFAM: RNA-binding region RNP-1 (RNA recognition motif); KEGG: ppr:PBPRB1959 hypothetical protein.
  
     0.773
Patl_0380
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: afu:AF1461 iron-sulfur cluster binding protein, putative.
    
   0.730
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.715
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.698
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 0.686
Patl_0488
TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase-like DEAD/DEAH box helicase-like Helicase ATP-dependent-like; KEGG: hch:HCH_05855 ATP-dependent helicase HrpB.
    
 0.584
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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