Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Patl_4100KEGG: hch:HCH_05713 hypothetical protein. (631 aa)    
Predicted Functional Partners:
Patl_4099
PFAM: NERD; KEGG: mca:MCA0729 hypothetical protein.
 
     0.929
Patl_4101
PFAM: helicase-like; KEGG: sth:STH1306 putative DNA helicase.
 
     0.925
Patl_4102
Superfamily I DNA and RNA helicases-like protein; KEGG: neu:NE0093 ATP-dependent DNA helicase.
 
     0.796
Patl_4088
PFAM: Dual specificity protein phosphatase diacylglycerol kinase, catalytic region; SMART: Protein tyrosine phosphatase, catalytic region; KEGG: vpa:VP0085 methylglyoxal synthase.
  
 0.675
Patl_1317
Phosphatidylglycerophosphatase; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG).
     
 0.577
Patl_4097
Hypothetical protein; KEGG: hpj:jhp1287 rod shape-determining protein.
   
 0.496
Patl_3991
Small GTP-binding protein; KEGG: ana:all3030 similar to Ras family protein; TIGRFAM: small GTP-binding protein; PFAM: Miro-like Ras; SMART: Ras small GTPase, Ras type Ras small GTPase, Rab type.
    
 0.493
Patl_4098
Hypothetical protein.
       0.475
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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