STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_4100KEGG: hch:HCH_05713 hypothetical protein. (631 aa)    
Predicted Functional Partners:
Patl_4099
PFAM: NERD; KEGG: mca:MCA0729 hypothetical protein.
 
     0.928
Patl_4101
PFAM: helicase-like; KEGG: sth:STH1306 putative DNA helicase.
 
     0.922
Patl_4102
Superfamily I DNA and RNA helicases-like protein; KEGG: neu:NE0093 ATP-dependent DNA helicase.
 
     0.780
Patl_1239
FeS cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
   
 
 0.710
Patl_3991
Small GTP-binding protein; KEGG: ana:all3030 similar to Ras family protein; TIGRFAM: small GTP-binding protein; PFAM: Miro-like Ras; SMART: Ras small GTPase, Ras type Ras small GTPase, Rab type.
    
 0.630
Patl_4098
Hypothetical protein.
       0.475
Patl_4097
Hypothetical protein; KEGG: hpj:jhp1287 rod shape-determining protein.
  
 
 0.467
Patl_1779
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase-like ComEC/Rec2-related protein; KEGG: cps:CPS_2124 DNA internalization-related competence protein ComEC/Rec2.
   
 
 0.448
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.