STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_4160N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: beta-lactamase Peptidoglycan-binding domain 1 N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: pha:PSHAa0522 hypothetical protein. (818 aa)    
Predicted Functional Partners:
Patl_1556
Penicillin-binding protein 6, Serine peptidase, MEROPS family S11; PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 Penicillin-binding protein 5-like; KEGG: cps:CPS_1712 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.934
Patl_4167
PFAM: Uncharacterised conserved protein UCP016719; KEGG: pha:PSHAa0521 hypothetical protein.
    0.919
Patl_4162
PFAM: glycoside hydrolase, family 3-like; KEGG: pha:PSHAb0065 beta-hexosaminidase A precursor (N-acetyl-beta-glucosaminidase) (beta-N-acetylhexosaminidase) (Chitobiase).
  
 0.904
nagZ
beta-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
  
 0.813
Patl_4161
KEGG: ilo:IL2339 outer membrane protein.
  
     0.657
murQ
Glucokinase regulatory-like protein; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. Together with AnmK, is also required for the utilization of anhydro-N-acetylmuramic acid (anhMurNAc) either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling.
 
  
 0.647
Patl_4171
PFAM: NLP/P60; KEGG: xcb:XC_3878 hypothetical protein.
 
  
 0.635
Patl_2539
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: beta-lactamase; KEGG: vfi:VF0968 beta-lactamase family protein.
  
   
 0.632
Patl_4159
PFAM: beta-lactamase; KEGG: xcv:XCV2967 beta-lactamase precursor.
 
   
0.616
Patl_4170
PFAM: Na+/solute symporter; KEGG: tdn:Tmden_2070 Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
     0.606
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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