STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_4164Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR sugar isomerase (SIS); KEGG: yps:YPTB2884 putative RpiR-family transcriptional regulatory protein. (282 aa)    
Predicted Functional Partners:
murQ
Glucokinase regulatory-like protein; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. Together with AnmK, is also required for the utilization of anhydro-N-acetylmuramic acid (anhMurNAc) either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling.
 
  
 0.789
Patl_4162
PFAM: glycoside hydrolase, family 3-like; KEGG: pha:PSHAb0065 beta-hexosaminidase A precursor (N-acetyl-beta-glucosaminidase) (beta-N-acetylhexosaminidase) (Chitobiase).
 
  
 0.568
Patl_4160
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: beta-lactamase Peptidoglycan-binding domain 1 N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: pha:PSHAa0522 hypothetical protein.
 
    0.560
Patl_4169
PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: cvi:CV2896 probable N-acetylglucosamine kinase.
 
     0.544
Patl_4174
KEGG: son:SO3505 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; Belongs to the metallo-dependent hydrolases superfamily. NagA family.
 
   
 0.518
Patl_0124
PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: cps:CPS_1026 BadF/BadG/BcrA/BcrD ATPase family protein.
 
     0.490
Patl_4161
KEGG: ilo:IL2339 outer membrane protein.
 
     0.453
Patl_2509
PTS system D-glucose-specific IIA component, Glc family; PFAM: sugar-specific permease, EIIA 1 domain; KEGG: msu:MS1508 phosphotransferase system IIA components; TC 4.A.1.1.1.
 
  
 0.444
Patl_4163
PFAM: NUDIX hydrolase; KEGG: son:SO0464 MutT/nudix family protein.
     
 0.444
Patl_0125
Asparaginase; KEGG: xcb:XC_1195 asparaginase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: peptidase T2, asparaginase 2.
  
    0.424
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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