STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_4166Hypothetical protein. (172 aa)    
Predicted Functional Partners:
Patl_3808
Hypothetical protein; KEGG: neu:NE0588 phage integrase:chain length determinant protein.
  
     0.593
Patl_2225
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC2660 TonB-dependent receptor.
 
     0.514
Patl_1526
KEGG: hch:HCH_05761 hypothetical protein.
  
     0.506
Patl_0182
PFAM: CUB; KEGG: hch:HCH_06140 hypothetical protein.
  
     0.505
Patl_0549
Methylthioadenosine nucleosidase; PFAM: purine and other phosphorylases, family 1; KEGG: ccr:CC2266 5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase.
  
     0.479
Patl_3068
PFAM: Capsule polysaccharide biosynthesis; KEGG: tcx:Tcr_1514 capsule polysaccharide biosynthesis.
  
     0.473
Patl_4167
PFAM: Uncharacterised conserved protein UCP016719; KEGG: pha:PSHAa0521 hypothetical protein.
       0.468
murQ
Glucokinase regulatory-like protein; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. Together with AnmK, is also required for the utilization of anhydro-N-acetylmuramic acid (anhMurNAc) either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling.
       0.468
Patl_0490
KEGG: sma:SAV4404 hypothetical protein.
  
     0.455
Patl_4169
PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: cvi:CV2896 probable N-acetylglucosamine kinase.
       0.446
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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