STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_4173Glutamine--fructose-6-phosphate transaminase; PFAM: sugar isomerase (SIS); KEGG: son:SO3506 glucosamine-6-phosphate isomerase. (327 aa)    
Predicted Functional Partners:
Patl_4174
KEGG: son:SO3505 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; Belongs to the metallo-dependent hydrolases superfamily. NagA family.
 
 
 0.989
Patl_4169
PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: cvi:CV2896 probable N-acetylglucosamine kinase.
 
  
  0.967
Patl_0124
PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: cps:CPS_1026 BadF/BadG/BcrA/BcrD ATPase family protein.
 
  
  0.947
glmS
Glutamine--fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
 
 
0.943
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
 
 
  0.922
Patl_4122
PfkB; PFAM: PfkB; KEGG: bsu:BG12796 fructokinase; Belongs to the carbohydrate kinase PfkB family.
  
 
 0.911
Patl_0131
Glutamine--fructose-6-phosphate transaminase; PFAM: sugar isomerase (SIS); KEGG: son:SO3506 glucosamine-6-phosphate isomerase.
  
  
 
0.905
Patl_3646
Phosphomannose isomerase-like protein; KEGG: tte:TTE1751 phosphomannose isomerase.
    
  0.905
Patl_1025
KEGG: vfi:VF0098 glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region glutamine synthetase, beta-Grasp.
     
 0.903
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.
 
   
  0.900
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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