STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_4232SMART: Peptidase M14, carboxypeptidase A; KEGG: pha:PSHAa2859 hypothetical protein. (852 aa)    
Predicted Functional Partners:
nfuA
HesB/YadR/YfhF; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
       0.788
Patl_1102
KEGG: pha:PSHAa0464 hypothetical protein.
  
     0.760
Patl_4259
PFAM: Phosphoglycerate mutase; KEGG: ilo:IL1582 broad specificity phosphatase, PhoE-like.
  
  
  0.704
Patl_4277
PFAM: amidohydrolase Amidohydrolase 3; KEGG: ilo:IL2390 Xaa-Pro dipeptidase family enzyme.
  
     0.703
Patl_2525
PFAM: peptidase S9, prolyl oligopeptidase active site region peptidase S9B, dipeptidylpeptidase IV-like; KEGG: pha:PSHAa1568 enzymatic protein.
  
     0.695
Patl_0466
PFAM: amidohydrolase WD40-like beta Propeller; KEGG: pha:PSHAa1171 hypothetical protein.
 
     0.536
Patl_1679
Peptidase M28; PFAM: Fibronectin, type III peptidase M28; KEGG: ilo:IL1071 probable aminopeptidase fused to fibronectin type 3 domain.
  
     0.523
Patl_1818
PFAM: peptidase S9, prolyl oligopeptidase active site region WD40-like beta Propeller; KEGG: pha:PSHAb0063 putative peptidase.
  
     0.496
Patl_2687
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Xylose isomerase-like TIM barrel; KEGG: rba:RB12073 hypothetical protein; Belongs to the hyi family.
  
     0.435
Patl_0463
PFAM: Amidohydrolase 3; KEGG: ilo:IL1207 predicted metal-dependent amidohydrolase with the TIM-barrel fold.
 
     0.425
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.