STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_4265PFAM: Nidogen, extracellular region; KEGG: cch:Cag_1897 nidogen, extracellular region. (474 aa)    
Predicted Functional Partners:
Patl_4264
PFAM: Invasion associated locus B; KEGG: bja:bll3901 hypothetical protein.
 
     0.865
Patl_0903
KEGG: ppr:PBPRB1708 hypothetical transposase of Tn10.
  
     0.643
Patl_1945
PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase.
  
     0.620
Patl_0863
PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase.
  
     0.619
Patl_1387
PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase.
  
     0.619
Patl_1846
PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase.
  
     0.618
Patl_2740
PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase.
  
     0.618
Patl_2598
PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase.
  
     0.617
Patl_2744
PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase.
  
     0.617
Patl_3451
PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase.
  
     0.617
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.