STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VE01_09940Uncharacterized protein. (1264 aa)    
Predicted Functional Partners:
VE01_08564
Uncharacterized protein.
    
 0.874
VE01_04353
Uncharacterized protein; Belongs to the SKP1 family.
    
 0.874
VE01_03579
Uncharacterized protein.
    
 0.874
VE01_01610
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.855
VE01_08994
DUF2236 domain-containing protein.
    
 0.837
VE01_08545
Fe2OG dioxygenase domain-containing protein.
    
 0.837
VE01_07159
DUF2236 domain-containing protein.
    
 0.837
HHT1
Histone H3; Belongs to the histone H3 family.
    
 0.837
VE01_07728
Ubiquitin-like domain-containing protein.
    
 0.837
VE01_05209
Uncharacterized protein.
    
 0.837
Your Current Organism:
Pseudogymnoascus verrucosus
NCBI taxonomy Id: 342668
Other names: P. verrucosus, UAMH 10579
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