STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VE01_10074Uncharacterized protein. (472 aa)    
Predicted Functional Partners:
VE01_06428
RRM domain-containing protein.
   
 0.794
CBC2
Nuclear cap-binding protein subunit 2.
    
 0.786
VE01_02333
Uncharacterized protein.
    
 0.779
VE01_02071
RRM domain-containing protein.
   
 0.775
VE01_00335
Uncharacterized protein.
   
 0.724
PRP8
Pre-mRNA-splicing factor 8.
    
   0.721
VE01_03326
Uncharacterized protein.
   
  0.716
VE01_04635
RRM domain-containing protein.
   
 0.710
RPB10
DNA-directed RNA Polymerase II subunit L.
   
  0.699
VE01_03273
RRM domain-containing protein.
   
 0.692
Your Current Organism:
Pseudogymnoascus verrucosus
NCBI taxonomy Id: 342668
Other names: P. verrucosus, UAMH 10579
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.